submit a nonmem model to slurm in parallel

Usage

submit_slurm_job(
  .mod,
  partition = get_slurm_partitions(),
  ncpu = 1,
  overwrite = FALSE,
  dry_run = FALSE,
  ...,
  slurm_job_template_path = getOption("slurmtools.slurm_job_template_path"),
  submission_root = getOption("slurmtools.submission_root"),
  bbi_config_path = getOption("slurmtools.bbi_config_path"),
  slurm_template_opts = list()
)

Arguments

.mod: a path to a model or a bbi nonmem model object
partition: name of the partition to submit the model
ncpu: number of cpus to run the model against
overwrite: whether to overwrite existing model results
dry_run: return the command that would have been invoked, without invoking
...: arguments to pass to processx::run
slurm_job_template_path: path to slurm job template
submission_root: directory to track job submission scripts and output
bbi_config_path: path to bbi.yaml file for bbi configuration
slurm_template_opts: choose slurm template