Default values provided to template

When calling submit_slurm_job several values are passed to the template file to be inserted. This guide summarizes the default information provided to the template. Using default arguments to submit_slurm_job the following values are provided to the slurm template file:

Variable	Default value
partition	submit_slurm_job argument
parallel	TRUE if ncpu > 1, otherwise FALSE
ncpu	submit_slurm_job argument
job_name	sprintf("%s-nonmem-run", basename(.mod$absolute_model_path))
project_path	here::here()
project_name	here::here() %>% basename()
bbi_exe_path	Sys.which("bbi")
bbi_config_path	getOption("slurmtools.bbi_config_path")
model_path	.mod$absolute_model_path
config_toml_path	paste0(.mod$absolute_model_path, ".toml") required for using nmm
nmm_exe_path	Sys.which("nmm")

Note

If you need to feed more arguments to the template you simply supply them in the slurm_template_opts argument.